Comparison of air samples, nasal- and ear-swabs and environmental dust samples for detection of Methicillin Resistant Staphylococcus aureus (MRSA) in pig herds.

Yvonne Agersø, Håkan Vigre, Lina M. Cavaco, and Mathilde H. Josefsen. Epidemiology and Infection. Vol 148, Ago 2014:1727-36.

Phylogenetic analysis of Staphylococcus aureus CC398 reveals a sub-lineage epidemiologically associated with infections in horses.

Abdelbary M. M., A. Wittenberg, C. Cuny, F. Layer, K. Kurt, L. H. Wieler, B. Walther, R. Skov, J. Larsen, H. Hasman, J. R. Fitzgerald, T. C. Smith, J. A. Wagenaar, A. Pantosti, M. Hallin, M. J. Struelens, G. Edwards, R. Böse, U. Nübel, W. Witte. 2014. PLoS One. 9:e88083.

Cephalosporinase-Producing Escherichia coli Clones and Plasmids from Parent Animals to Broilers and to Broiler Meat in a Production Without Use of Cephalosporins Agersø Y., J. D. Jensen, H. Hasman, K. Pedersen. 2014. Spread of Extended Spectrum. Foodborne Pathog Dis. 11:740-6.

In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.

Carattoli A, E. Zankari, A. Garcìa-Fernandez, M. Volby Larsen, O. Lund, L. Villa, F.M. Aarestrup, H. Hasman. 2014. Antimicrob Agents Chemother. 58:3895-903.

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival. 

Christiansen M. T., R. S. Kaas, R. R. Chaudhuri, M. A. Holmes, H. Hasman, F. M. Aarestrup. 2014. PLoS One. 9:e89018.

Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.

Joensen K.G., F. Scheutz, O. Lund, H. Hasman, R. S. Kaas, E. M. Nielsen, F. M. Aarestrup. 2014. J. Clin. Microbiol. 52:1501-10.

Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples (vol 52, pg 139, 2014)

Larsen M.V., S. Cosentino, O. Lukjancenko, D. Saputra, S. Rasmussen, H. Hasman, T. Sicheritz-Pontén, F. M. Aarestrup, D. W. Ussery O. Lund. 2014. 

Benchmarking of methods for genomic taxonomy. J. Clin. Microbiol. 52:1529-39.

Hasman, H., Saputra, D., Sicheritz-Pontén, T., Lund, O., Svendsen, C. A., Frimodt-Møller, N. & Aarestrup, F. M. 2014 In : European Journal of Clinical Microbiology & Infectious Diseases. 52, 8, p. 3136-3136 1 p.

Evidence-based policy for controlling antimicrobial resistance in the food chain in Denmark

Wielinga, P., Jensen, V. F., Aarestrup, F. M. & Schlundt, J. 2014 In : Food Control. 40, p. 185-192

Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis

Seier-Petersen, M. A., Jasni, A., Aarestrup, F. M., Vigre, H., Mullany, P., Roberts, A. P. & Agersø, Y. 2014 In : Journal of Antimicrobial Chemotherapy. 69, 2, p. 343-348

Persistence of fluoroquinolone-resistant Salmonella enterica serovar Kentucky from poultry and poultry sources in Nigeria

Raufu, I. A., Fashae, K., Ameh, J. A., Ambali, A., Ogunsola, F. T., Coker, A. O. & Hendriksen, R. S. 2014 In : Journal of Infection in Developing Countries. 8, 3, p. 384-388 5 p.

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica

Leekitcharoenphon, P., Nielsen, E. M., Kaas, R. S., Lund, O. & Aarestrup, F. M. 2014 In : P L o S One. 9, 2, 11 p.e87991

Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance and E. coli virulence genes in bacteriophage and prophage nucleotide sequences.

Kleinheinz, K. A., Joensen, K. G. & Larsen, M. V. 2014 In : Bacteriophage. 4, e27943-1

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

Kaas, R. S., Leekitcharoenphon, P., Aarestrup, F. M. & Lund, O. 2014 In : PLOS ONE. 9, 8, 8 p.e104984

Temporal relationship between decrease in antimicrobial prescription for Danish pigs and the “Yellow Card” legal intervention directed at reduction of antimicrobial use

Jensen, V. F., de Knegt, L., Dalhoff Andersen, V. & Wingstrand, A. 2014 In : Preventive Veterinary Medicine. 11 p.

Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius

Issack, M. I., Hendriksen, R. S., Hyytiae-Trees, E., Svendsen, C. A. & Mikoleit, M. 2014 In : Journal of Infection in Developing Countries. 8, 4, p. 454-460

The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313

Herrero-Fresno, A., Wallrodt, I., Leekitcharoenphon, P., Olsen, J. E., Aarestrup, F. M. & Hendriksen, R. S. 2014 In : PLOS ONE. 9, 1, e84566

Rapid whole genome sequencing for the detection and characterization of microorganisms directly from clinical samples.

Hasman, H., Saputra, D., Sicheritz-Pontén, T., Lund, O., Svendsen, C. A., Frimodt-Møller, N. & Aarestrup, F. M. 2014 In : Journal of Clinical Microbiology. 52, 1, p. 139-146

Characterization of Extended spectrum beta-lactamases (ESBL)-producing Escherichia coli obtained from Danish pigs, pig farmers and their families from farms with high or no consumption of 3rd or 4th generation cephalosporins

Hammerum, A. M., Larsen, J., Dalhoff Andersen, V., Lester, C. H., Skytte, T. S. S., Hansen, F., Olsen, S. S., Mordhorst, H., Skov, R. L., Aarestrup, F. M. & Agersø, Y. 2014 In : Journal of Antimicrobial Chemotherapy. 8 p.

Antimicrobial resistance of zoonotic and commensal bacteria in Europe: The missing link between consumption and resistance in veterinary medicine

Garcia-Migura, L., Hendriksen, R. S., Fraile, L. & Aarestrup, F. M. 2014 In : Veterinary Microbiology. 170, 1-2, p. 1-9

Analysis of the contribution of bacteriophage ST64B to in vitro virulence traits of Salmonella enterica serovar Typhimurium

Fresno, A. H., Leekitcharoenphon, P., Hendriksen, R. S., Olsen, J. & Aarestrup, F. M. 2014 In : Journal of Medical Microbiology. 63, Pt 3, p. 331-342

Diversity and antimicrobial susceptibility of Salmonella enterica serovars isolated from pig farms in Ibadan, Nigeria

Fashae, K. & Hendriksen, R. S. 2014 In : Folia Microbiologica. 59, 1, p. 69-77

Extended-Spectrum-Beta-Lactamases, AmpC Beta-Lactamases and Plasmid Mediated Quinolone Resistance in Klebsiella spp. from Companion Animals in Italy

Donati, V., Feltrin, F., Hendriksen, R. S., Svendsen, C. A., Cordaro, G., Garcia-Fernandez, A., Lorenzetti, S., Lorenzetti, R., Battisti, A. & Franco, A. 2014 In : PLOS ONE. 9, 3, e90564

Spatio-temporal analysis of Salmonella surveillance data in Thailand

Coutinho Calado Domingues, A. R., Vieira, A., Hendriksen, R. S., Pulsrikarn, C. & Aarestrup, F. M. 2014 In : Epidemiology and Infection. 142, 8, p. 1614-1624

Spread of Extended Spectrum Cephalosporinase-Producing Escherichia coli Clones and Plasmids from Parent Animals to Broilers and to Broiler Meat in a Production Without Use of Cephalosporins

Agersø, Y., Jensen, J. D., Hasman, H. & Pedersen, K. 2014 In : Foodborne Pathogens and Disease. 7 p.​


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