Whole Genome Sequencing

Please find information related to WGS as well as a protocol for 'Whole Genome Sequencing and Bioinformatic Analysis of Bacterial Isolates Related to the EU Monitoring of Antimicrobial Resistance' under the WGS-tab (link)

ESBL-, ampC- and carbapenemase-producing E. coli


Protocol ​for isolation, identification and storage of Campylobacter jejuni and/or C. coli for the EU monitoring of antimicrobial resistance (please access the document via this link to the webpage of the EURL Campylobacter)

The protocol and the work it was based on was presented by Hanna Skarin from the EURL Campylobacter working group at a webinar held on 5 May 2021. See the presentation via this link

Enterococcus speciation and Campylobacter species ID


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