Training Course (NGS for surveillance of AMR) - Kgs. Lyngby - September/2018

pdf_logo

From isolate to whole genome sequence, Part 1

By Saria Otani, DTU Food

​​​(PDF document, 2.8 MB)

pdf_logo

From isolate to whole genome sequence, Part 2

By Ana Rita Rebelo, DTU Food

​​​(PDF document, 1.2 MB)

pdf_logo

Quality control (QC) metrics for WGS data 

By Kim Ng, Statens Serum Institut, Denmark

​​(PDF document, 0.5 MB)

pdf_logo

Alignment and mapping

By Philip Clausen, DTU Food

​(PDF document, 300 MB)

pdf_logo

Changing times: use of WGS for Food Safety

By Beatriz Guerra, EFSA

​​(PDF document, XX MB)

pdf_logo

AMR prediction based on WGS data

By Valeria Bortolaia, DTU Food

​(PDF document, 1.4 MB)

pdf_logo

cgMLST clustering

By Pimlapas Leekitcharoenphon (Shinny), DTU Food

​(PDF document, 2.9 MB)

pdf_logo

WGS data sharing for improved public health

By Jette Sejer Kjeldgaard, DTU Food

(PDF document, 1.5 MB)

pdf_logo

The EURL-AR hub

By Pimlapas Leekitcharoenphon (Shinny), DTU Food

​(PDF document, 3.1 MB)

pdf_logo

GMI experience

By Rene S. Hendriksen, DTU Food

(PDF document, 2.2 MB)

pdf_logo

Exercise 01 - QC-parameters for WGS data

By Pimlapas Leekitcharoenphon (Shinny), DTU Food

​(PDF document, 0.3 MB)

pdf_logo

Exercise 01 - QC-parameters for WGS data - solution

By Ana Rita Rebelo, DTU Food

​(PDF document, 1.1 MB)

pdf_logo

Exercise 03 - solution

By Pimlapas Leekitcharoenphon (Shinny), DTU Food

​(PDF document, 70 KB)

Disclaimer​

​Information presented on this website is considered public information (unless otherwise noted) and may be distributed or copied. Use of appropriate byline/photo/image credit is requested. While The National Food Institute makes every effort to provide accurate and complete information, various data such as names, telephone numbers, etc. may change prior to updating. The National Food Institute welcomes suggestions on how to improve our home page and correct errors. The National Food Institute provides no warranty, expressed or implied, as to the accuracy, reliability or completeness of furnished data.

Some of the documents on this server may contain live references (or pointers) to information created and maintained by other organizations. Please note that The National Food Institute does not control and cannot guarantee the relevance, timeliness, or accuracy of these outside materials.

Information​

Technical University of Denmark, National Food Institute

CVR: 30060946

AdDress

Denmark

DK-2800 Lyngby

Kemitorvet, Building 204​

Contact us

Tlf.: +45 3588 6601

E-mail: suska@food.dtu.dk